Related documentation
|
Record |
Publication number |
Description |
|---|---|---|
|
Torrent Suite™ Software 5.22 User Guide |
Describes the Torrent Suite™ Software and provides procedures for common tasks. |
|
|
Oncomine™ Childhood Cancer Research Assay User Guide |
Describes how to use Ion Reporter™ Software for data analysis of the Oncomine™ Childhood Cancer Research Assay. |
|
|
Oncomine™ Human Immune Repertoire User Guide |
Describes how to use Ion Reporter™ Software for data analysis of the Oncomine™ TCR Beta Assay and Oncomine™ BCR IGH Assay. |
|
|
Oncomine™ Comprehensive Assay v3 User Guide |
Describes how to use Ion Reporter™ Software for data analysis of the Oncomine™ Comprehensive Assay. |
|
|
Oncomine™ Comprehensive Assay Plus User Guide |
Describes how to use Ion Reporter™ Software for data analysis of the Oncomine™ Comprehensive Assay Plus. |
|
|
Oncomine™ Focus Assay, Part III: Variant Analysis User Guide |
Describes how to use Ion Reporter™ Software for data analysis of the Oncomine™ Focus Assay. |
|
|
Oncomine™ cfDNA Assays, Part III: Variant Analysis User Guide |
Describes how to use Ion Reporter™ Software for data analysis of the Oncomine™ Lung cfDNA Assay, Oncomine™ Colon cfDNA Assay, and the Oncomine™ Breast cfDNA Assay. |
|
|
Ion ReproSeq™ PGS View Kits User Guide |
Describes how to use Ion Reporter™ Software for data analysis of the Ion ReproSeq™ assay. |
|
|
Oncomine™ Reporter User Guide |
Describes how to generate reports in Oncomine™ Reporter Software. |
|
|
Ion AmpliSeq™ Library Kit 2.0 User Guide |
Describes sequencing data analysis for libraries prepared using Ion AmpliSeq™ panels. |
|
|
Ion AmpliSeq™ HD Library Kit User Guide |
Describes data analysis for libraries sequenced with Ion AmpliSeq™ HD analysis workflows. |
|
|
Oncomine™ BRCA Research Assay User Guide |
Describes how to use Ion Reporter™ Software for data analysis of the Oncomine™ BRCA Research Assay. |
|
|
Oncomine™ Tumor Mutation Load Assay User Guide |
Describes how to use Ion Reporter™ Software for data analysis of the Oncomine™ Tumor Mutation Load Assay. |
|
|
Oncomine™ Pan‑Cancer Cell‑Free Assay User Guide |
Describes how to use Ion Reporter™ Software for data analysis of the Oncomine™ Pan‑Cancer Cell‑Free Assay. |
|
|
IonReporterUploader Command-Line Utility User Guide |
Describes how to use command-line utility to set up samples and transfer analysis results files to Ion Reporter™ Software. |
|
|
Ion Torrent™ Ion CarrierSeq™ ECS Kits User Guide |
Describes how to use Ion Reporter™ Software for data analysis of Ion AmpliSeq™ Ion CarrierSeq™ ECS Panel analysis results. |
Advanced algorithm documentation
Ion Reporter™ Software contains many advanced algorithms that have been optimized specifically for Ion Torrent™ semiconductor Sequencing technology. Below are application notes and white papers that provide more background and are available at the Thermo Fisher Scientific website.
-
Variant filtering and prioritization using the Ion AmpliSeq™ Exome trio workflow in Ion Reporter™ Software, available at http://tools.thermofisher.com/content/sfs/brochures/Ion-AmpliSeq-Exome-Application-Note.pdf
-
Metagenomics 16S Algorithm Overview, available at http://tools.thermofisher.com/content/sfs/brochures/ion-reporter-16s-metagenomics-algorithms-whitepaper.pdf.
-
Application Note: CNV detection by Ion semiconductor sequencing, available at http://tools.thermofisher.com/content/sfs/brochures/CNV-Detection-by-Ion.pdf.
-
Application Note: Detection of aneuploidy in a single cell using the Ion ReproSeq PGS Kit, available at https://tools.thermofisher.com/CONTENT/SFS/BROCHURES/ANEUPLOIDY-APP-NOTE.PDF.
-
Cancer genomics and transcriptomics research, available at https://www.thermofisher.com/us/en/home/global/forms/life-science/request-NGS-application-note.html?appnote=5.
-
Low-frequency mutations from cell-free DNA, available at http://tools.thermofisher.com/content/sfs/brochures/ngs-analysis-mutations-cfdna-app-note.pdf.
-
Reproductive genomics and inherited disease research, available at http://tools.thermofisher.com/content/sfs/brochures/Ion-S5-S5XL-App-Note-Inherited-Disease.pdf.
-
Rapid sequencing of microorganisms, available at http://tools.thermofisher.com/content/sfs/brochures/Ion-S5-S5XL-App-Note-Infectious-Disease.pdf.