Apply a sequence variant baseline workflow
preset to an analysis workflow
You can create a custom
Sequence Variant Baseline
workflow preset that you can use as a baseline control to detect somatic variants.
For more information, see Sequence variant baselines. You must add the
custom baseline to an analysis workflow to use the baseline in an analysis.
In the
Workflows tab,
start to create or copy an analysis workflow.
Click
Overview,
then select an analysis workflow to copy, then click Actions
> Copy.
Click
Create Workflow.
In the
Reference
workflow bar step, select the target regions file for the panel that is
associated with the analysis workflow.
In the
Parameters
workflow bar step, click the link to open the
Variant Finding
parameters and click
Advanced.
Scroll to select a sequence variant baseline
that matches the panel associated with the analysis workflow from the
Analysis SVB File
dropdown list.
After you make a selection, you can view details for the baseline in the
Summary
pane.
Click
Next.
Proceed through the remaining
steps in the workflow bar.
