Default columns—These columns are available by default when you open the Analyses table if no table preferences are applied.
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Selection box—Use to select the analysis in the row that contains the selection box. Select one or more analyses to view analysis details, visualize analysis results, or perform other actions on the selected analysis or analyses.
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 (Checked Out)
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Checked out—Indicates that edits to the analysis are in progress. Open the analysis in view-only mode to view analysis results and see the name of the user who is making edits to the analysis.
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Analyze role—Indicates that the analysis is shared by a user who has the Analyze role.
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 (Add)
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Add notes—Use to add a new note to analysis. Analysis notes are time-stamped written notes to capture comments or observations for an analysis that has successfully completed. An analysis can contain multiple notes from different users.
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 (Note)
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Add/Delete Notes—Use to add a note to analysis, or delete an analysis note.
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Analysis
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The name of the analysis.
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Sample
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The name of the sample.
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Version
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The Ion Reporter™ Software version number of the analysis workflow.
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Reference
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Indicates the human or other genomic or database reference used in the analysis.
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Stage
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The stage of the analysis.
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Project
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The name of the project. Can be inherited from Torrent Suite™ Software.
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Workflow
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The name of the analysis workflow used in the analysis.
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Launched On
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The date and time that the analysis was launched.
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Status
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The status of the analysis.
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Available columns — These columns can be added to customize the Analyses table.
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Analyzed
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Analysis is complete for the samples shown in the Analyses table.
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Analyzed By
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The user name of the person who analyzed the data.
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Analyzed On
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The date of the analysis.
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Annotations
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The variant annotations that are added.
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Barcode
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The name of the specific barcode in the selected barcode kit.
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Biopsy Days
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The time point post-fertilization at which the biopsy was taken from an embryo.
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Cancer Type
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The type of cancer in the sample.
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Cell Num
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The cell count of the biopsied material.
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Chip ID
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The identifying number assigned to the chip.
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Chip Type
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The chip type that was used when preparing the sample, such as Ion 550™ Chip.
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Control Sequencing Kit
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The control kit that was used when preparing the sample.
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Copy Number Baseline
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The set of control samples that were used to create a baseline for detecting copy number variants (CNVs).
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Couple ID
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The identifier of the couple for use with the Reproductive research application.
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Device ID
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The identifying number of the sequencing instrument.
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Embryo ID
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The identifying number or name assigned to an embryo.
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Filter Chain
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The name of filter chain that was applied.
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Fusion Panel
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The name of fusion panel that was used.
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Gender
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Information about the gender of the sample.
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Grouping Type
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The grouping type.
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Hotspots Regions
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The name of the hotspots file that was used in Torrent Suite™ Software.
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Imported By
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The name of the user who imported the sample.
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Imported On
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The date that the sample was imported.
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Instrument
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The name of the sequencer that was used.
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Instrument Type
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The type of the sequencer, such as Ion GeneStudio™ S5 Sequencer.
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IR Uploader Version
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The software version number of the IonReporterUploader plugin that was used in Torrent Suite™ Software.
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Launched By
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The name of the user who launched the analysis.
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Library Kit Name
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The name of the library kit that was used in the analysis.
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Locked Workflow
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Indicates whether the analysis workflow used in the analysis is locked. A locked analysis workflow cannot be edited or unlocked. However, it can be copied.
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Mouse Strain
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The strain of the mouse sample.
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MyVariants Database
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The name of the MyVariants database that was used.
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Percentage Cellularity
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The percentage of tumor cells in the sample.
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Plan Name
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The name of the plan that was used in Torrent Suite™ Software.
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Plugin
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The name of the plugin or plugins used in the analysis.
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Population
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The ethnicity indicator for the sample.
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Report Generated By
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The name of the user who generated the report.
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Report Generated On
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The date that the report was generated.
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Research Application
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The research application that applies to the analysis, such as DNA, Aneuploidy, and so on.
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Research Category
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The research category that applies to the analysis, such as exome, reproductive, oncology, inherited disease, and so on.
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Role
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The role in a pair or a group of samples, such as mother, father, proband, or unknown.
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Run Date
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The date of the sequencing run.
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Run ID
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The identifying number of the sequencing run.
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Run Name
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The name of the run that was used in Torrent Suite™ Software.
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Sample Collection Date
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The date that the sample was collected.
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Sample ID
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(Optional) If you manage samples in an external system (for example, a LIMS), you can enter the identifier from that system in this column.
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Sample Preparation Kit
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The name of the sample preparation kit used in Torrent Suite™ Software.
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Sample Receipt Date
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The date that the sample was received.
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Sample Transferred
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An indication of whether the sample has been transferred to a user in another organization.
Transferred—The sample has been transferred to an organization. A sample can be transferred to more than one organization. Click Transfer to see when and to whom the sample was transferred.
Available—The sample is available to be transferred.
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Sample Type
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Information about the relationship between individual samples that are analyzed.
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Sequencing Kit Name
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The name of the sequencing kit that was used in Torrent Suite™ Software.
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Sequencing Run Type
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The type of the sequencing run that was used in Torrent Suite™ Software
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Tagged for IRU
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Indicates whether the analysis workflow used in the analysis is tagged for use with IonReporterUploader plugin.
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Target Regions
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The name of the target regions file that was used in Torrent Suite™ Software
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Templating Kit Name
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The name of the templating kit that was sed in Torrent Suite™ Software.
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Torrent Suite Hotspots File
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The name of the hotspots file that was used in Torrent Suite™ Software.
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Torrent Suite Region File
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The name of the target regions file that was used in Torrent Suite™ Software.
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Torrent Suite Results Name
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The name of the Torrent Suite™ Software run report.
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Torrent Suite Version
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The version number of the Torrent Suite™ Software that was used for the analysis.
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Variant Type Detection
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The type of variant cells detected in the analysis.
Germline
Rare Somatic
Somatic
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Workflow Revision
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The number of the revision of the analysis workflow.
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