Exon deletion thresholds for Oncomine™ Fusion panels
|
Oncomine™ Fusion Panel |
Exon Deletion Assay |
Type |
Present/ absent threshold |
Instrument/chip |
Ion Reporter™ Software analysis workflow |
|---|---|---|---|---|---|
|
Oncomine™ Comprehensive Fusion Panel |
EGFRvlll |
Fusion |
120 |
Ion PGM™ System/ Ion 318™ Chip |
Oncomine™ Comprehensive - w2.2 - Fusions |
|
Oncomine™ Comprehensive - w2.2 - DNA and Fusions |
|||||
|
Oncomine™ Focus Fusion Panel |
MET exon 14 |
Fusion |
120 |
Ion PGM™ System/ Ion 318™ Chip |
Oncomine™ Focus - w2.2 - Fusions |
|
EGFRvIII |
Fusion |
120 |
Oncomine™ Focus - w2.2 - DNA and Fusions |
||
|
Oncomine™ Focus Fusion Panel for Ion 520™ Chip |
MET exon 14 |
Fusion |
120 |
Ion S5™ System/ Ion 520™ Chip |
Oncomine™ Focus - 520 -w2.2 - Fusions |
|
EGFRvIII |
Fusion |
120 |
Oncomine™ Focus - 520 - w2.2 - DNA and Fusions |
||
|
Oncomine™ Comprehensive & Focus Fusion panel for Ion 540™ Chip |
MET exon 14 |
Fusion |
1,000 |
Ion S5™ System/ Ion 540™ Chip |
Oncomine™ Comprehensive v1 - 540 - w2.2 - DNA and Fusions |
|
EGFRvIII |
Fusion |
1,000 |
Oncomine™ Comprehensive v2 - 540 - w2.2 - DNA and Fusions - Single Sample |
||
|
Oncomine™ Comprehensive v3 Panel |
MET exon 14 |
RNAExon Variant |
1,000 |
Ion S5™ System/ Ion 540™ Chip |
Oncomine™ Comprehensive v3 - w3.0 - DNA and Fusions - Single Sample |
|
EGFRvIII |
RNAExon Variant |
1,000 |
Oncomine™ Comprehensive v3 - w3.0 -Fusions - Single Sample |
||
|
Others (9 other genes have similar assays) |
RNAExon Variant |
Present/ absent calls are not made |