Predefined analysis workflows

Analysis workflows are sets of analysis components that you can use to automate the analysis of data. Predefined analysis workflows are optimized with parameters for use with specific products.

These predefined analysis workflows are organized into the following research categories:

Research category

Description

Exome

For use with Ion AmpliSeq™ Exome and TargetSeq Exome panels.

16S rRNA Profiling

For use with 16S Metagenomics panels and Ion AmpliSeq™ Microbiome Health Research panels.

Oncology–Liquid Biopsy

For use with a variety of Ion AmpliSeq™ and Ion AmpliSeq™ HD, and Oncomine™ cancer panels and assays.

Reproductive

For use with Ion ReproSeq™ and other PGS whole genome assays, and the Ion AmpliSeq™ Ion CarrierSeq™ ECS Panel.

Immunology

For use with a variety of Ion AmpliSeq™ cancer panels and Oncomine™ immunology assays.

For use with a variety of Ion AmpliSeq™ and Ion AmpliSeq™ HD, and Oncomine™ cancer panels and assays.

Oncology–ImmunoOncology

For use with a variety of Ion AmpliSeq™ and Oncomine™ cancer panels and assays.

Annotate Variants

For use with VCF samples as the input to annotate variants.

Oncology–HemeOnc

For use with a variety of Ion AmpliSeq™ and Ion AmpliSeq™ HD, and Oncomine™ cancer panels and assays.

Oncology–Solid Tumor

For use with a variety of Ion AmpliSeq™ and Ion AmpliSeq™ HD, and Oncomine™ cancer panels and assays.

Carrier Screening

For use with the Ion AmpliSeq™ Ion CarrierSeq™ ECS Panel.

Inherited Disease

For use with a variety of Ion AmpliSeq™ and Oncomine™ cancer assays.

Plugin

Inserts plugin code into a workflow and allows a plugin to be included as the last step or the only step in when an analysis workflow is launched.