HasDeNovoRefAllele

A proband variant is assigned the category HasDeNovoRefAllele if all of the following are true:

• The variant has an allele that:

  • Is the same as the reference allele.

  • Does not appear in the father's genotype.

  • Does not appear in the mother's genotype.

• The coverage of the father's genotype at this variant position is at least denovo_ref_allele_min_father_coverage.

• The coverage of the mother's genotype at this variant position is at least denovo_ref_allele_min_mother_coverage.

See also HasDeNovoNonRefAllele.