Exon deletion thresholds for Oncomine™ Fusion panels

Oncomine™ Fusion Panel

Exon Deletion Assay

Type

Present/ absent threshold

Instrument/chip

Ion Reporter™ Software analysis workflow

Oncomine™ Comprehensive Fusion Panel

EGFRvlll

Fusion

120

Ion PGM™ System/ Ion 318™ Chip

Oncomine™ Comprehensive - w2.2 - Fusions

Oncomine™ Comprehensive - w2.2 - DNA and Fusions

Oncomine™ Focus Fusion Panel

MET exon 14

Fusion

120

Ion PGM™ System/ Ion 318™ Chip

Oncomine™ Focus - w2.2 - Fusions

EGFRvIII

Fusion

120

Oncomine™ Focus - w2.2 - DNA and Fusions

Oncomine™ Focus Fusion Panel for Ion 520™ Chip

MET exon 14

Fusion

120

Ion S5™ System/ Ion 520™ Chip

Oncomine™ Focus - 520 -w2.2 - Fusions

EGFRvIII

Fusion

120

Oncomine™ Focus - 520 - w2.2 - DNA and Fusions

Oncomine™ Comprehensive & Focus Fusion panel for Ion 540™ Chip

MET exon 14

Fusion

1,000

Ion S5™ System/ Ion 540™ Chip

Oncomine™ Comprehensive v1 - 540 - w2.2 - DNA and Fusions

EGFRvIII

Fusion

1,000

Oncomine™ Comprehensive v2 - 540 - w2.2 - DNA and Fusions - Single Sample

Oncomine™ Comprehensive v3 Panel

MET exon 14

RNAExon Variant

1,000

Ion S5™ System/ Ion 540™ Chip

Oncomine™ Comprehensive v3 - w3.0 - DNA and Fusions - Single Sample

EGFRvIII

RNAExon Variant

1,000

Oncomine™ Comprehensive v3 - w3.0 -Fusions - Single Sample

Others (9 other genes have similar assays)

RNAExon Variant

Present/ absent calls are not made