Oncomine™ Myeloid MRD Assays

Variant type	Oncomine™ Gene class	Oncomine™ Variant class	Annotation criteria
Gene fusion	Gain-of-Function	Fusion	SVTYPE = "Fusion" FILTER = "PASS" Is a targeted fusion isoform
Non-targeted fusion	Gain-of-Function	NonTargetedFusion	SVTYPE = "Fusion" FILTER = "PASS" Non-Targeted field is present NT_FUSION_IN_FRAME is not FALSE NT_FUSION_DRIVER_INVOLVED is not FALSE NT_FUSION_SECONDARY is not TRUE
RNA exon variant	Gain-of-Function	RNAExonVariant	SVTYPE = "RNAExonVariant" or "Fusion" FILTER = "PASS" Is a targeted RNA exon variant
Loss-of-function truncating de novo mutation	Loss-of-Function	Truncating	Positive mutation call Functional impact is frameshift block substitution, frameshift deletion, frameshift insertion, or nonsense Occurs in a de novo calling gene
Missense hotspot mutation	Gain-of-Function Loss-of-Function	Hotspot	Positive mutation call Functional impact is missense Transcript and coding syntax occur in predefined missense hotspot list
In-frame hotspot mutation	Gain-of-Function Loss-of-Function	Hotspot	Positive mutation call Function, transcript, and coding syntax occur in predefined in-frame hotspot list
Gain-of-function truncating hotspot mutation	Gain-of-Function	Hotspot	Positive mutation call Function, transcript, and coding syntax occur in predefined truncating hotspot list Occurs in a gain-of-function gene
Loss-of-function truncating hotspot mutation	Loss-of-Function	Truncating	Positive mutation call Function, transcript, and coding syntax occur in predefined truncating hotspot list Occurs in a loss-of-function gene
MNV hotspot mutation	Gain-of-Function Loss-of-Function	Hotspot	Positive mutation call Transcript and coding syntax occur in MNV hotspot list
FLT3 internal tandem duplication	Gain-of-Function	FLT3ITD	SVTYPE = "FLT3ITD" SUBTYPE is not "Combined"