Research applications
Ion Reporter™ Software supports research applications to use when setting up analysis workflows. The research application selections work with sample group selections, and affect the options that are available in the following workflow steps.
The default options are recommended. Advanced users may change these settings if needed.
|
Research application |
Description |
|---|---|
|
Aneuploidy |
Detect human chromosomal large structural abnormalities in low-pass whole-genome sequencing research samples. |
|
Annotate Variants |
Annotate the variants from a VCF file for research use. |
|
DNA |
Detect and annotate variants in human DNA research samples. |
|
DNA and Fusions |
Detect and annotate variants in human DNA and fusions research samples. |
|
Immune Repertoire [1]
|
Detect and analyze T-cell receptor beta (TCRB) and B-cell receptor (BCR) rearrangements for research use. |
|
Metagenomics [1] |
Determine population diversity in polymicrobial research samples using detection of 16S gene variable regions. |
|
Mutation Load [1] |
Calculates mutation load and displays associated graphs and tables in human DNA samples. Note: This research application applies only to the Oncomine™ Tumor Mutation Load - w1.0 - DNA - Single Sample analysis workflow. |
|
Oncology-Liquid Biopsy [1] |
Detects and annotates low frequency variants including SNPs and INDELs (down to 0.1% limit of detection), fusions, and CNVs from targeted nucleic acid libraries (DNA or RNA). |
|
Fusions |
Detect and annotate gene fusions in human DNA research samples. |
This research application is for use only with a copy and edit of an analysis workflow. This research application is not an option when you create a custom analysis without predefined settings.