Display different views of analysis results

You can see several different views of analysis results in Ion Reporter™ Software.

  1. In the Analyses tab, click Overview.
  2. Click an analysis name to open the Analysis Results table.
  3. Select from the following views.

    Option

    Description

    Summary

    Provides a summary of the analysis results.

    Includes columns for Classification, Genotype, Locus, Filter, Reference, Observed Allele, Type, No Call Reason, Genes, Location, Length, Info, Variant ID, Variant Name, and Allele Frequency % information.

    LOD

    Provides analysis results for analyses that use Ion AmpliSeq™ HD or TagSeq analysis workflows.

    Oncomine

    Provides analysis results for analyses that use the Oncomine™ or Ion AmpliSeq™ HD analysis workflows.

    Functional

    Provides a functional view of the analysis results.

    Includes columns for Classification, Locus, Genotype, Reference, Type, No Call Reason, Genes, Strand, Exon, Transcript, Coding, Amino Acid Change, Variant Effect, and PhyloP information.

    Population

    Provides a population view of the analysis results.

    Includes columns for Classification, Locus, Genotype, Reference, Type, No Call Reason, Genes, dbSNP, DGV, MAF, EMAF, AMAF, GMAF, and UCSC Common SNPs. If the analysis includes the ExAC annotation source, the following columns are included: ExAC LAF, ExAC EAAF, ExAC OAF, ExAC EFAF, ExAC SAAF, ExAC ENFAF, ExAC AAF, and ExAC GAF information. If the analysis uses a custom gnomAD annotation source, the following columns are included: gnomAD AAF, gnomAD AJAF, gnomAD EAAF, gnomAD EFAF, gnomAD FEM, gnomAD FNFAF, gnomAD GAF, gnomAD LAF, gnomAD MAF, gnomAD OAF, gnomAD SAAF information.

    Ontologies

    Provides an ontologies view of the analysis results.

    Includes columns for Classification, Locus, Genotype, Reference, Type, No Call Reason, Genes, COSMIC, OMIM, Gene Ontology, and DRA information.

    Pharmacogenomics

    Provides a pharmacogenomics view of the analysis results.

    Includes columns for Classification, Locus, Genotype, Reference, Type, No Call Reason, Genes, DrugBank, and ClinVar information.

    Somatic

    Provides a somatic view of the analysis results.

    Includes columns for Classification, Locus, Genotype, Reference, Type, No Call Reason, Genes, Length, Amino Acid Change, Allele Coverage, Allele Ratio, Allele Frequency %, and Information.

    QC

    Provides a QC view of the analysis results,

    Includes columns for Classification, Locus, Genotype, Reference, Type, No Call Reason, Genes, p-value, Phred QUAL Score, Raw Coverage, Coverage, Allele Coverage, Allele Ratio, Ref+/Ref-/Var+/Var-, Homopolymer Length, and Subset of information.