Contigs annotated in the GRCh38 reference genome
Ion Reporter™ Software annotates only variants that map to the following contigs as provided in the GRCh38.fasta and GRCh38.fasta.fai files.
The following contigs (sequences) are supported by Ion Reporter™ Software.
|
Contig Name |
Length (bps) |
|---|---|
|
chr1 |
248956422 |
|
chr2 |
242193529 |
|
chr3 |
198295559 |
|
chr4 |
190214555 |
|
chr5 |
181538259 |
|
chr6 |
170805979 |
|
chr7 |
159345973 |
|
chr8 |
145138636 |
|
chr9 |
138394717 |
|
chr10 |
133797422 |
|
chr11 |
135086622 |
|
chr12 |
133275309 |
|
chr13 |
114364328 |
|
chr14 |
107043718 |
|
chr15 |
101991189 |
|
chr16 |
90338345 |
|
chr17 |
83257441 |
|
chr18 |
80373285 |
|
chr19 |
58617616 |
|
chr20 |
64444167 |
|
chr21 |
46709983 |
|
chr22 |
50818468 |
|
chrX |
156040895 |
|
chrY |
57227415 |
|
chrM |
16569 |
|
chr22_KI270879v1_alt |
304135 |
Two kinds of variants are not supported:
In particular, chr22_KI270879v1_alt is completely masked except for 269,814 - 279,355, which contains only the GSTT1 gene. No amino acid changes are provided for the masked regions. However, gene and transcript information is provided.