Codon differences in chromosome M
Chromosome M has its own genome that is different in 4 codons from the other chromosomes.
Ion Reporter™ Software uses the Homo sapiens mitochondrion, complete genome NCBI Reference Sequence: NC_012920.1.
The new rCRS chrM assembly has 16569 bases. The previous version had 16571 bases.
The 2 coding tables, one for standard chromosomes and one for chromosome M, are listed below. These tables are from the following NCBI site:
The Standard Code (transl_table=1) for chromosomes 1-22, X and Y (NUCLEAR)
By default all transl_table in GenBank flat files are equal to id 1, and this is not shown. When transl_table is not equal to id 1, it is shown as a qualifier on the CDS feature.
Note: In these tables, an asterisk represents a STOP codon.
TTT F Phe TCT S Ser TAT Y Tyr TGT C Cys TTC F Phe TCC S Ser TAC Y Tyr TGC C Cys TTA L Leu TCA S Ser TAA * Ter TGA * Ter TTG L Leu i TCG S Ser TAG * Ter TGG W Trp
CTT L Leu CCT P Pro CAT H His CGT R Arg CTC L Leu CCC P Pro CAC H His CGC R Arg CTA L Leu CCA P Pro CAA Q Gln CGA R Arg CTG L Leu i CCG P Pro CAG Q Gln CGG R Arg
ATT I Ile ACT T Thr AAT N Asn AGT S Ser ATC I Ile ACC T Thr AAC N Asn AGC S Ser ATA I Ile ACA T Thr AAA K Lys AGA R Arg ATG M Met i ACG T Thr AAG K Lys AGG R Arg
GTT V Val GCT A Ala GAT D Asp GGT G Gly GTC V Val GCC A Ala GAC D Asp GGC G Gly GTA V Val GCA A Ala GAA E Glu GGA G Gly GTG V Val GCG A Ala GAG E Glu GGG G Gly
The Vertebrate Mitochondrial Code (transl_table=2) for chromosome M.
TTT F Phe TCT S Ser TAT Y Tyr TGT C Cys TTC F Phe TCC S Ser TAC Y Tyr TGC C Cys TTA L Leu TCA S Ser TAA * Ter TGA W Trp TTG L Leu TCG S Ser TAG * Ter TGG W Trp
CTT L Leu CCT P Pro CAT H His CGT R Arg CTC L Leu CCC P Pro CAC H His CGC R Arg CTA L Leu CCA P Pro CAA Q Gln CGA R Arg CTG L Leu CCG P Pro CAG Q Gln CGG R Arg
ATT I Ile i ACT T Thr AAT N Asn AGT S Ser ATC I Ile i ACC T Thr AAC N Asn AGC S Ser ATA M Met i ACA T Thr AAA K Lys AGA * Ter ATG M Met i ACG T Thr AAG K Lys AGG * Ter
GTT V Val GCT A Ala GAT D Asp GGT G Gly GTC V Val GCC A Ala GAC D Asp GGC G Gly GTA V Val GCA A Ala GAA E Glu GGA G Gly GTG V Val i GCG A Ala GAG E Glu GGG G Gly
The differences from the Standard Code are:
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