phyloP
The phyloP filter range that is used in Ion Reporter™ Software corresponds to the values given in the following UCSC Table Browser website:
http://genome.ucsc.edu/cgi-bin/hgTables?command=start
The following table shows the Table Browser settings and values that are used to retrieve the phyloP values:
|
Setting |
Value |
|---|---|
|
clade |
Mammal |
|
genome |
Human |
|
assembly |
Feb. 2009 (GRCh37/hg19) |
|
group |
All Tables |
|
database |
hg19 |
|
table |
phyloP46wayPlacental |
|
region |
genome |
|
output format |
data points |
|
file type returned |
plain text |
|
button |
summary/statistics |
The following minimum and maximum ranges among all chromosomes that the Table Browser returned, with the rounded values used in the Ion Reporter™ Software phyloP filter: