Use these guidelines to edit the example CSV file, or create your own CSV file, to launch analyses by batch.
IMPORTANT! The following column headings are required. Do not remove or edit this line in the CSV file. If you are creating a CSV file in plain text format, ensure that you include each of the commas as shown.
Enter the attributes in the order that you want the columns to appear in the analysis. The order that the attributes are entered in the spreadsheet is the order that is used for columns in the analyses.
For multiple samples, use a colon to add the role to each sample name. For example: Demo AmpliSeq IDP Daughter:proband
Ensure that you include the following contents in the batch analysis file.
Column name
Example
Required
Type
Enter one of the following values.
DNA_RNA_FUSION
multi
paired
paired_tumor_normal
single
SINGLE_RNA_FUSION
trio
To upload analyses with fusions, enter DNA_RNA_FUSION for DNA. If you use RNA-only samples, you enter SINGLE_RNA_FUSION.
single
Yes
Workflow name
AmpliSeq CHPv2 single sample
Yes
Version
5.12
Yes
IsIonDefault
Enter Yes, if a predefined analysis workflow is provided, or No if a predefined analysis workflow is not included.
