Effect of Ensembl and RefSeq sources on Polyphen and SIFT scores
You can create a custom annotation set with Polyphen and SIFT scores. When you use the scores in an annotation set, ensure that you use the corresponding RefSeq or Ensembl® gene models.
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Functional scores v7 is for the gene model versions RefSeq 83 and Ensembl® 90.
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Functional Scores v6 is for the gene model versions RefSeq 77 and Ensembl® 84.
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Functional Scores v5 is for the gene model versions RefSeq 72 and Ensembl® 79.
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Functional Scores v4 is for the gene model versions RefSeq 63 and Ensembl® 74.
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Functional scores v3 is for the gene model versions RefSeq 53 and Ensembl® 65.
For more information, see Create annotation set workflow presets.
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