Download a BAM file

downloadBAM
URL	/api/v1/downloadBAM
Description	Download a BAM file for a given sample or analysis. This procedure applies to Ion Reporter™ Server only.
Method	GET
Request query parameters	filePath String. Mandatory. Filepath of bam file got using / getAssociatedBamfiles AP. type String. Optional. Valid values are "pdf" or "" (by default creates a ZIP file and downloads it.)
Example request	https://ionreporter.thermofisher.com:80/api/v1/downloadBAM?filePath=/shared/data/ShazIndia-Labs/data/IRU_Uploads/20180302_01_06_30/v1/CFTR_15KB_deletion/1_AmpCFTR_contig7_15KBDeletions.bam"
Request headers	Content-Type:application/x-www-form-urlencoded Authorization:`API Token`
Returns	Downloads the given BAM file. User can replace "download.bam" in curl command with the BAM file name.

Response fields

Status code	Response message
200	Successful response
400	Bad request
404	Not found
401	User is not authenticated
500	Error occurred

Curl command


curl -o download.bam -L -k -X GET "https://<server name>/api/v1/downloadBAM?filePath=/data/IR/data/IR_Org/ion.reporter@lifetech.com/Demo_AmpliSeq_CHPv2_tumor/Demo_AmpliSeq_CHPv2_tumor_20180319063625805/outputs/VariantCallerActor-00/merged.bam.ptrim.bam" -H "Content-Type:application/x-www-form-urlencoded" -H "auth: ZWJjODU2ODIwYWY4OTk2Yjg2MzI5NTU1MzIxZTA0NGVlYTZlNjIyYTJlMGJlNDMwMGI3OWM4ZGNhZTNlNzg1Mw" -H "Connection: close"