You can review the results of an Oncomine™ analysis run through a TagSeq analysis workflow, then apply different filter chains to alter the results.
In the Analyses tab, click the link in the Analysis column to open an analysis of interest.
The analysis results appear with the Oncomine™ Variants filter chain applied.
(Optional) In the Filter Options pane, select a different filter chain from the list.
Option
Description
Called Variants and Controls
This filter chain reports all variants (either hotspots or novel) that pass the filter and are not called as reference or NOCALL. Variant types include SNV, INDEL, MNV, CNV, LONGDEL, FUSION, EXPR_CONTROL, ASSAYS_5P_3P, RNA_HOTSPOT, GENE_EXPRESSION, RNAExonVariant, ProcControl, FLT3-ITD, and RNA Exon Tiles.
Called Hotspot Variants and Controls
This filter chain reports all hotspot variants that pass the filter and are not called as reference or NOCALL. Variant types include SNV, INDEL, MNV, and RNA Exon Tiles.
Variant Matrix Summary
Select this filter chain for analysis results that generate a visualization that contains the same set of variants that are included in the Analysis Results table. This filter chain allows results to be exported. Import the exported results file into Oncomine™ Reporter (OKR) to include the variants shown in the Variant Matrix Summary view in OKR reports.
Filter variant types include: SNV/INDEL, CNV, fusions, and RNAExonVariants.
