Summary
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Provides a summary of the analysis results.
Includes columns for Classification, Genotype, Locus, Filter, Reference, Observed Allele, Type, No Call Reason, Genes, Location, Length, Info, Variant ID, Variant Name, and Allele Frequency % information.
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LOD
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Provides analysis results for analyses that use AmpliSeqHD or TagSeq analysis workflows.
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Oncomine
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Provides analysis results for analyses that use the Oncomine™ or AmpliSeqHD analysis workflows.
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Functional
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Provides a functional view of the analysis results.
Includes columns for Classification, Locus, Genotype, Reference, Type, No Call Reason, Genes, Strand, Exon, Transcript, Coding, Amino Acid Change, Variant Effect, and PhyloP information.
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Population
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Provides a population view of the analysis results.
Includes columns for Classification, Locus, Genotype, Reference, Type, No Call Reason, Genes, dbSNP, DGV, MAF, EMAF, AMAF, GMAF, and UCSC Common SNPs. If the analysis includes the ExAC annotation source, the following columns are included: ExAC LAF, ExAC EAAF, ExAC OAF, ExAC EFAF, ExAC SAAF, ExAC ENFAF, ExAC AAF, and ExAC GAF information. If the analysis uses a custom gnomAD annotation source, the following columns are included: gnomAD AAF, gnomAD AJAF, gnomAD EAAF, gnomAD EFAF, gnomAD FEM, gnomAD FNFAF, gnomAD GAF, gnomAD LAF, gnomAD MAF, gnomAD OAF, gnomAD SAAF information.
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Ontologies
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Provides an ontologies view of the analysis results.
Includes columns for Classification, Locus, Genotype, Reference, Type, No Call Reason, Genes, COSMIC, OMIM, Gene Ontology, and DRA information.
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Pharmacogenomics
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Provides a pharmacogenomics view of the analysis results.
Includes columns for Classification, Locus, Genotype, Reference, Type, No Call Reason, Genes, DrugBank, and ClinVar information.
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Somatic
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Provides a somatic view of the analysis results.
Includes columns for Classification, Locus, Genotype, Reference, Type, No Call Reason, Genes, Length, Amino Acid Change, Allele Coverage, Allele Ratio, Allele Frequency %, and Information.
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QC
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Provides a QC view of the analysis results,
Includes columns for Classification, Locus, Genotype, Reference, Type, No Call Reason, Genes, p-value, Phred QUAL Score, Raw Coverage, Coverage, Allele Coverage, Allele Ratio, Ref+/Ref-/Var+/Var-, Homopolymer Length, and Subset of information.
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