[
{
"stage": "VARIANT_REVIEW",
"flagged": false,
"name": "Demo AmpliSeq Exome VCF_1460407585676",
"id": "ff80818153ed40a401540716785a081a",
"qc_metrics": {
"Demo AmpliSeq Exome VCF": {
"Number of Heterozygous SNVs": " 32451",
"CNV/Total": " 0.000",
"Number of Homozygous INDELs": " 1089",
"Ti/Tv Ratio (SNPs)": " 2.308",
"MAPD": "N/A",
"LongDels/Total": " 0.000",
"Number of Heterozygous INDELs": " 2113",
"Heterozygotes/Homozygotes": " 1.737",
"Indels/kb": " 0.001",
"Number of Heterozygous MNVs": " 0",
"Number of LongDels": " 0",
"Number of Homozygous MNVs": " 0",
"Indels/Total": " 0.059",
"SNPs/kb": " 0.017",
"Number of Homozygous SNVs": " 18814",
"Number of CNVs": " 0",
"dbSNP concordance": " 0.934"
}
},
"started_by": "Ion User",
"ion_reporter_version": "5.2",
"samples": {
"PROBAND": "Demo AmpliSeq Exome VCF"
},
"qc_report_pdf": "http://ionreporter.thermofisher.com/api/v1/download?type=pdf&
filePath=/data/IR/data/IR_Org/download/pdf/
890e4268-46dc-442b-a4ed-aa87bb28f71a/
ff80818153ed40a401540716785a081a_QC.pdf",
"start_date": "2016-04-11 13:49:53.0",
"status": "SUCCESSFUL",
"qc_package": "http://ionreporter.thermofisher.com/api/v1/download?
filePath=/data/IR/data/IR_Org/ion.reporter@lifetech.com/
Demo_AmpliSeq_Exome_VCF/Demo_AmpliSeq_Exome_VCF_20160411134952720/
analysis_downloads/QC_Bundle/
qc-report-Demo_AmpliSeq_Exome_VCF_1460407585676_2016-04-12 04-33.zip"
}
]
|